Publications

2017

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Alcala N., Jenkins T., Christe P., Vuilleumier S. 2017. Host shift and cospeciation rate estimation from co-phylogenies. Ecology Letters. doi 10.1111/ele.12799

 

Chaput-Bardy A., Alcala N., Secondi J., Vuilleumier S., 2017. Network analysis for species management in rivers networks: Application to the Loire River. Biological Conservation. 210: 26-36. http://doi.org/10.1016/j.biocon.2017.04.003

2016

 

Irwin KK., Laurent S., Matuszewski S., Vuilleumier S., Ormond L., Shim H., Bank B., and Jensen JD.­ 2016. On the importance of skewed offspring distributions and background selection in viral population genetics. Heredity. 117(6):393-399. doi:10.1038/hdy.2016.58

 

Alcala N., Jensen J D., Telenti A. Vuilleumier S., 2016. The genomic signature of population reconnection following isolation: From theory to HIV. G3 Genes Genomes Genetics, 6(1): 107-120.

 

Büchi L., Vuilleumier S., 2016. Ecological strategies in stable and disturbed environments depend on species specialisation. Oikos 125, (10): 1408–1420

 

2015

 

Stoffel C., Dufresnes C., Okello J. BA, Noirard C., Joly P., Nyakaana S., Muwanika V. B, Alcala N., Vuilleumier S., Siegismund H R, Fumagalli L. 2015. Genetic consequences of population expansions and contractions in the common hippopotamus (Hippopotamus amphibius) since the Late Pleistocene. Molecular Ecology 24(10) pp. 2507-2520. [DOI] [Pubmed]

 

Vuilleumier S., Bonhoeffer S. 2015. Contribution of recombination to the evolutionary history of HIV. Current Opinion in HIV & AIDS, Vol 10.

 

2014

 

Alcala N., Vuilleumier S., 2014. Turnover and accumulation of genetic diversity across large time-scale cycles of population isolation and connection. Proceedings of the Royal Society. B Biological Sciences pp. 2014 281, 20141369

 

Alcala N., Goudet J., Vuilleumier S. 2014 Measuring genetic diversity and differentiation:  what we can learn from GST and D? Theoretical population Biology 94:74-84

 

Büchi L. and Vuilleumier S. 2014 Specialists-generalists coexistence in heterogeneous environments. The American Naturalist, 183(5): 612–624

 

Alcala N., 07-2014. The Measure and Dynamics of Genetic Diversity in Structured Populations. Université de Lausanne, Faculté de biologie et médecine, Vuilleumier S. (dir.).

 

2013

 

*Alcala N., Streit D., Goudet J., Vuilleumier S., 2013. Peak and Persistent Excess of Genetic Diversity Following an Abrupt Migration Increase. Genetics 193(3) pp. 953-971.

*Written up in Faculty1000 Biology

 

Joost S., Vuilleumier S., Jensen J.D., Schoville S., Leempoel K., Stucki S., Widmer I., Melodelima C., Rolland J., Manel S., 2013. Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics. Molecular Ecology 22(14) pp. 3659-3665.

 

Nieuwenhuis B.P.S., Billiard S., Vuilleumier S., Petit E., Hood M.E., Giraud T., 2013. Evolution of uni- and bifactorial sexual compatibility systems in fungi. Heredity 111(6) pp. 445-455

 

Vuilleumier S., Alcala N., Niculita-Hirzel H., 2013. Transitions from reproductive systems governed by two self-incompatible loci to one in fungi. Evolution 67(2) pp. 501-516.

 

2012

 

Büchi L., Vuilleumier S., 2012. Dispersal Strategies, Few Dominating or Many Coexisting: The Effect of Environmental Spatial Structure and Multiple Sources of Mortality. Plos One 7(4) pp. e34733.

 

Vuilleumier S. and H.P.Possingham. 2012. Interacting populations in heterogeneous environments. Ecological Modelling 228 96– 105

 

2011

 

Vuilleumier S, Buttler A, Perrin N, Yearsley J.M., 2011. Invasion and eradication of a competitively superior species in heterogeneous landscapes. Ecological Modelling 222, 398-406.

 

2010

 

**Schwander T., Vuilleumier S., Dubman J., Crespi B.J., 2010. Positive feedback in the transition from sexual reproduction to parthenogenesis. Proceedings of the Royal Society B Biological Sciences 277(1686), 1435-1442.

**Selected as Nature Research Highlights

 

Vuilleumier S., Bolker B.M., Lévêque O., 2010. Effects of colonization asymmetries on metapopulation persistence. Theoretical Population Biology 78(3), 225-238.

 

Vuilleumier S., Goudet J., Perrin N., 2010. Evolution in heterogeneous populations: from migration models to fixation probabilities. Theoretical Population Biology 78(4), 250-258.

 

2008

 

Vuilleumier, S., J. Yearsley, and N. Perrin. 2008. Fixation probability of locally adapted alleles in heterogenous environment. Genetics.178: 467-475.

 

2007

 

Vuilleumier S., R. Lande, J. J. M. van Alphen, and O. Seehausen. 2007. Invasion and fixation of sex-reversal genes. Journal of Evolutionary Biology, 20:913-920.

 

Vuilleumier S., C. Wilcox, B. Cairns, and H. P. Possingham. 2007. How patch configuration affects the impact of disturbances on metapopulation persistence. Theoretical Population Biology, 72(1):77-85.

 

Vuilleumier S. and P. Fontanillas. 2007. Landscape structure affects dispersal in the greater white-toothed shrew: inference between genetic and simulated ecological distances. Ecological Modelling, 201(3-4):369-376.

 

2006

 

***Vuilleumier, S. and H. P. Possingham. 2006. Does colonisation asymmetry matter in metapopulations? Proceedings of the Royal Society of London B 273(1594):167-42.

***Written up in Faculty1000 Biology

 

Vuilleumier, S. and N. Perrin. 2006. Effects of cognitives abilities on metapopulation connectivity. Oikos 113:139-147.

 

Vuilleumier, S. and R. Metzger. 2006. Animal dispersal modelling: handling landscape features and related animal choices. Ecological Modelling 190(1-2): 159-170

 

2002

 

Vuilleumier, S. and R. Prélaz-Droux. 2002. Map of ecological networks for landscape planning. Landscape and Urban Planning 58(2-4): 157-170.